ToFFi - Toolbox for Frequency-based Fingerprinting of Brain Signals

Related tags

Deep LearningToFFi_Toolbox
Overview

ToFFi Toolbox

This repository contains "before peer review" version of the software related to the preprint of the publication ToFFi - Toolbox for Frequency-based Fingerprinting of Brain Signals (arXiv:2110.09919) by Michał Konrad Komorowski (@micholeodon) from Neurocognitive Laboratory at Nicolaus Copernicus University, Torun, Poland, and his collaborators.

Abstract

Spectral Fingerprints (SFs) are unique power spectra signatures of human brain regions of interest (ROIs, Keitel & Gross, 2016). SFs allow for accurate ROI identification and can serve as biomarkers of differences exhibited by non-neurotypical groups. At present, there are no open-source, versatile tools to perform Spectral Fingerprinting.

We have filled this gap by creating a modular, highly-configurable MATLAB Toolbox for Frequency-based Fingerprinting (ToFFi). It can transform MEG/EEG signals into unique spectral representations using ROIs provided by anatomical (AAL, Desikan-Killiany), functional (Schaefer), or other custom volumetric brain parcellations. Toolbox design supports reproducibility and parallel computations.

Prerequisites

  • MATLAB (version R2021a or newer)
  • FieldTrip toolbox (version 20210816 or newer)

The following toolboxes need to be installed alongside MATLAB:

  • Signal Processing Toolbox,
  • Statistics and Machine Learning Toolbox,
  • Parallel Computing Toolbox.

Installation

  1. Clone, or download this repository as a .zip file and unpack.
  2. The ToFFi toolbox is ready to use.

Full documentation

The full documentation of the ToFFi Toolbox can be found here.

Source Lines of Code (SLOC)

394 text files. 374 unique files.
144 files ignored.

github.com/AlDanial/cloc v 1.82 T=0.36 s (1006.2 files/s, 81665.7 lines/s)

Language files blank comment code
MATLAB 243 1952 3709 6894
HTML 91 2571 4531 6609
Bourne Shell 9 433 375 1670
Markdown 1 11 0 108
Bourne Again Shell 14 42 208 84
MUMPS 2 3 0 16
SUM: 360 5012 8823 15381

License

This code is licensed under the GNU LESSER GENERAL PUBLIC LICENSE, version 2.1.

Owner
GitHub Repository
NER for Indian languages

CL-NERIL: A Cross-Lingual Model for NER in Indian Languages Code for the paper - https://arxiv.org/abs/2111.11815 Setup Setup a virtual environment Th

Akshara P 0 Nov 24, 2021
PyTorch package for the discrete VAE used for DALL·E.

Overview [Blog] [Paper] [Model Card] [Usage] This is the official PyTorch package for the discrete VAE used for DALL·E. Installation Before running th

OpenAI 9.5k Jan 05, 2023
Soft actor-critic is a deep reinforcement learning framework for training maximum entropy policies in continuous domains.

This repository is no longer maintained. Please use our new Softlearning package instead. Soft Actor-Critic Soft actor-critic is a deep reinforcement

Tuomas Haarnoja 752 Jan 07, 2023
Reviatalizing Optimization for 3D Human Pose and Shape Estimation: A Sparse Constrained Formulation

Reviatalizing Optimization for 3D Human Pose and Shape Estimation: A Sparse Constrained Formulation This is the implementation of the approach describ

Taosha Fan 47 Nov 15, 2022
In this project we combine techniques from neural voice cloning and musical instrument synthesis to achieve good results from as little as 16 seconds of target data.

Neural Instrument Cloning In this project we combine techniques from neural voice cloning and musical instrument synthesis to achieve good results fro

Erland 127 Dec 23, 2022
LightNet++: Boosted Light-weighted Networks for Real-time Semantic Segmentation

LightNet++ !!!New Repo.!!! ⇒ EfficientNet.PyTorch: Concise, Modular, Human-friendly PyTorch implementation of EfficientNet with Pre-trained Weights !!

linksense 237 Jan 05, 2023
Official PyTorch implementation of the paper Image-Based CLIP-Guided Essence Transfer.

TargetCLIP- official pytorch implementation of the paper Image-Based CLIP-Guided Essence Transfer This repository finds a global direction in StyleGAN

Hila Chefer 221 Dec 13, 2022
Implements VQGAN+CLIP for image and video generation, and style transfers, based on text and image prompts. Emphasis on ease-of-use, documentation, and smooth video creation.

VQGAN-CLIP-GENERATOR Overview This is a package (with available notebook) for running VQGAN+CLIP locally, with a focus on ease of use, good documentat

Ryan Hamilton 98 Dec 30, 2022
Local Similarity Pattern and Cost Self-Reassembling for Deep Stereo Matching Networks

Local Similarity Pattern and Cost Self-Reassembling for Deep Stereo Matching Networks Contributions A novel pairwise feature LSP to extract structural

31 Dec 06, 2022
Pixel-Perfect Structure-from-Motion with Featuremetric Refinement (ICCV 2021, Oral)

Pixel-Perfect Structure-from-Motion (ICCV 2021 Oral) We introduce a framework that improves the accuracy of Structure-from-Motion by refining keypoint

Computer Vision and Geometry Lab 831 Dec 29, 2022
The repository contains reproducible PyTorch source code of our paper Generative Modeling with Optimal Transport Maps, ICLR 2022.

Generative Modeling with Optimal Transport Maps The repository contains reproducible PyTorch source code of our paper Generative Modeling with Optimal

Litu Rout 30 Dec 22, 2022
Locally Enhanced Self-Attention: Rethinking Self-Attention as Local and Context Terms

LESA Introduction This repository contains the official implementation of Locally Enhanced Self-Attention: Rethinking Self-Attention as Local and Cont

Chenglin Yang 20 Dec 31, 2021
[ICCV 2021] FaPN: Feature-aligned Pyramid Network for Dense Image Prediction

FaPN: Feature-aligned Pyramid Network for Dense Image Prediction [arXiv] [Project Page] @inproceedings{ huang2021fapn, title={{FaPN}: Feature-alig

EMI-Group 175 Dec 30, 2022
DIR-GNN - Discovering Invariant Rationales for Graph Neural Networks

DIR-GNN "Discovering Invariant Rationales for Graph Neural Networks" (ICLR 2022)

Ying-Xin (Shirley) Wu 70 Nov 13, 2022
Instance-based label smoothing for improving deep neural networks generalization and calibration

Instance-based Label Smoothing for Neural Networks Pytorch Implementation of the algorithm. This repository includes a new proposed method for instanc

Mohamed Maher 1 Aug 13, 2022
Fast, flexible and fun neural networks.

Brainstorm Discontinuation Notice Brainstorm is no longer being maintained, so we recommend using one of the many other,available frameworks, such as

IDSIA 1.3k Nov 21, 2022
Robust fine-tuning of zero-shot models

Robust fine-tuning of zero-shot models This repository contains code for the paper Robust fine-tuning of zero-shot models by Mitchell Wortsman*, Gabri

224 Dec 29, 2022
DL course co-developed by YSDA, HSE and Skoltech

Deep learning course This repo supplements Deep Learning course taught at YSDA and HSE @fall'21. For previous iteration visit the spring21 branch. Lec

Yandex School of Data Analysis 1.3k Dec 30, 2022
AntiFuzz: Impeding Fuzzing Audits of Binary Executables

AntiFuzz: Impeding Fuzzing Audits of Binary Executables Get the paper here: https://www.usenix.org/system/files/sec19-guler.pdf Usage: The python scri

Chair for Sys­tems Se­cu­ri­ty 88 Dec 21, 2022
Large scale and asynchronous Hyperparameter Optimization at your fingertip.

Syne Tune This package provides state-of-the-art distributed hyperparameter optimizers (HPO) where trials can be evaluated with several backend option

Amazon Web Services - Labs 236 Jan 01, 2023