A way of looking at COVID-19 data that I haven't seen before.

Overview

Visualizing Omicron: COVID-19 Deaths vs. Cases

Click here for other countries.

Data is from Our World in Data/Johns Hopkins University.

About this project

For most of the COVID-19 pandemic, the daily focus has been on the number of cases. This still seems to be true as the omicron wave hits.

But omicron on the whole has been much milder. For those who have been recently doubly or triple vaccinated and/or recently infected and are free from underlying comorbidities (of which the list is long), the risk of death is very small. The primary risk of this phase of the pandemic is of those not in the above groups getting sick all at once, overwhelming available hospital beds, while the healthcare workforce is itself depleted as workers quarantine or are at home suffering (usually mild) symptoms.

Here we explore an interesting way to visualize differences in the various waves of the pandemic: plotting deaths as a function of cases.

It suggests that omicron is indeed quite different.

The notebook shows plots for many countries. The main function should be self-contained enough for you to copy and paste and use to plot data for any country you like.

The data is from https://github.com/owid/covid-19-data, specifically from JHU (public > data > jhu). The usual caveats apply, including completeness from some countries and deaths with vs. of COVID-19 (incidental vs. causative).

Please use as you see fit, as long as it's with attribution.

Ramy Arnaout, MD, DPhil / Boston, MA / January 8, 2022

Tandem Mass Spectrum Prediction with Graph Transformers

MassFormer This is the original implementation of MassFormer, a graph transformer for small molecule MS/MS prediction. Check out the preprint on arxiv

Röst Lab 13 Oct 27, 2022
Simple and fast histogramming in Python accelerated with OpenMP.

pygram11 Simple and fast histogramming in Python accelerated with OpenMP with help from pybind11. pygram11 provides functions for very fast histogram

Doug Davis 28 Dec 14, 2022
Graphical display tools, to help students debug their class implementations in the Carcassonne family of projects

carcassonne_tools Graphical display tools, to help students debug their class implementations in the Carcassonne family of projects NOTE NOTE NOTE The

1 Nov 08, 2021
simple tool to paint axis x and y

simple tool to paint axis x and y

G705 1 Oct 21, 2021
Epagneul is a tool to visualize and investigate windows event logs

epagneul Epagneul is a tool to visualize and investigate windows event logs. Dep

jurelou 190 Dec 13, 2022
Visualizations of some specific solutions of different differential equations.

Diff_sims Visualizations of some specific solutions of different differential equations. Heat Equation in 1 Dimension (A very beautiful and elegant ex

2 Jan 13, 2022
A flexible tool for creating, organizing, and sharing visualizations of live, rich data. Supports Torch and Numpy.

Visdom A flexible tool for creating, organizing, and sharing visualizations of live, rich data. Supports Python. Overview Concepts Setup Usage API To

FOSSASIA 9.4k Jan 07, 2023
A napari plugin for visualising and interacting with electron cryotomograms.

napari-tomoslice A napari plugin for visualising and interacting with electron cryotomograms. Installation You can install napari-tomoslice via pip: p

3 Jan 03, 2023
Gallery of applications built using bqplot and widget libraries like ipywidgets, ipydatagrid etc.

bqplot Gallery This is a gallery of bqplot examples. View the gallery at https://bqplot.github.io/bqplot-gallery. Contributing new examples Clone this

8 Aug 23, 2022
Yata is a fast, simple and easy Data Visulaization tool, running on python dash

Yata is a fast, simple and easy Data Visulaization tool, running on python dash. The main goal of Yata is to provide a easy way for persons with little programming knowledge to visualize their data e

Cybercreek 3 Jun 28, 2021
Generate visualizations of GitHub user and repository statistics using GitHub Actions.

GitHub Stats Visualization Generate visualizations of GitHub user and repository statistics using GitHub Actions. This project is currently a work-in-

Aditya Thakekar 1 Jan 11, 2022
A concise grammar of interactive graphics, built on Vega.

Vega-Lite Vega-Lite provides a higher-level grammar for visual analysis that generates complete Vega specifications. You can find more details, docume

Vega 4k Jan 08, 2023
Standardized plots and visualizations in Python

Standardized plots and visualizations in Python pltviz is a Python package for standardized visualization. Routine and novel plotting approaches are f

Andrew Tavis McAllister 0 Jul 09, 2022
A visualization tool made in Pygame for various pathfinding algorithms.

Pathfinding-Visualizer 🚀 A visualization tool made in Pygame for various pathfinding algorithms. Pathfinding is closely related to the shortest path

Aysha sana 7 Jul 09, 2022
A Python library created to assist programmers with complex mathematical functions

libmaths was created not only as a learning experience for me, but as a way to make mathematical models in seconds for Python users using mat

Simple 73 Oct 02, 2022
Create matplotlib visualizations from the command-line

MatplotCLI Create matplotlib visualizations from the command-line MatplotCLI is a simple utility to quickly create plots from the command-line, levera

Daniel Moura 46 Dec 16, 2022
ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data

ScisorWiz: Vizualizer for Differential Isoform Expression README ScisorWiz is a linux-based R-package for visualizing differential isoform expression

Alexander Stein 6 Oct 04, 2022
Minimalistic tool to visualize how the routes to a given target domain change over time, feat. Python 3.10 & mermaid.js

Minimalistic tool to visualize how the routes to a given target domain change over time, feat. Python 3.10 & mermaid.js

Péter Ferenc Gyarmati 1 Jan 17, 2022
阴阳师后台全平台(使用网易 MuMu 模拟器)辅助。支持御魂,觉醒,御灵,结界突破,秘闻副本,地域鬼王。

阴阳师后台全平台辅助 Python 版本:Python 3.8.3 模拟器:网易 MuMu | 雷电模拟器 模拟器分辨率:1024*576 显卡渲染模式:兼容(OpenGL) 兼容 Windows 系统和 MacOS 系统 思路: 利用 adb 截图后,使用 opencv 找图找色,模拟点击。使用

简讯 27 Jul 09, 2022
PanGraphViewer -- show panenome graph in an easy way

PanGraphViewer -- show panenome graph in an easy way Table of Contents Versions and dependences Desktop-based panGraphViewer Library installation for

16 Dec 17, 2022