WORD: Revisiting Organs Segmentation in the Whole Abdominal Region

Overview

WORD: Revisiting Organs Segmentation in the Whole Abdominal Region (Paper and DataSet).

  • [New] Note that all the emails about the download permission of WORD will be handled after the paper is accepted, all information will be updated in time in this repo, please don't send them multiple times!!!
  • This repo provides the codebase and dataset of work WORD: Revisiting Organs Segmentation in the Whole Abdominal Region, and the download requirement will be approved after the paper is accepted, stay tuned !!!
  • Now, we are preparing an online evaluation server for the fair and open research if you have experience with it or want to join or provide some support to this project, please contact us !!!
  • Some information about the WORD dataset is presented in the following:
Fig. 1. An example in the WORD dataset.
Fig. 2. Volume distribution or each organ in the WORD dataset.
Fig. 3. User study based on three junior oncologists independently, each of them comes from a different hospital.

DataSet

Please contact Xiangde (luoxd1996 AT gmail DOT com) for the dataset. Two steps are needed to download and access the dataset: 1) using your google email to apply for the download permission; 2) using your affiliation email to get the unzip password. We will get back to you after the paper is accepted. We just handle the real-name email and your email suffix must match your affiliation. The email should contain the following information:

Name/Homepage/Google Scholar: (Tell us who you are.)
Primary Affiliation: (The name of your institution or university, etc.)
Job Title: (E.g., Professor, Associate Professor, Ph.D., etc.)
Affiliation Email: (the password will be sent to this email, we just reply to the email which is the end of "edu".)
How to use: (Only for academic research, not for commercial use or second-development.)

In addition, this work is still ongoing, the WORD dataset will be extended to larger and more diverse (more patients, more organs, and more modalities, more clinical hospitals' data and MR Images will be considered to include future), any suggestion, comment, collaboration, and sponsor are welcome.

Acknowledgment and Statement

  • This dataset belongs to the Healthcare Intelligence Laboratory at University of Electronic Science and Technology of China and is licensed under the GNU General Public License v3.0.
  • This project has been approved by the privacy and ethical review committee. We thank all collaborators for the data collection, annotation, checking, and user study!
  • This project and dataset were designed for open-available academic research, not for clinical, commercial, second-development, or other use. In addition, if you used it for your academic research, you are encouraged to release the code and the pre-trained model.
  • The interesting and memorable name WORD is suggested by Dr. Jie-Neng, thanks a lot !!!

Citation

It would be highly appreciated if you cite our paper when using the WORD dataset or code:

@article{luo2021word,
  title={{WORD}: Revisiting Organs Segmentation in the Whole Abdominal Region},
  author={Luo, Xiangde and Liao, Wenjun and Xiao, Jianghong and Song, Tao and Zhang, Xiaofan and Li, Kang and Wang, Guotai and Zhang, Shaoting},
  journal={arXiv preprint arXiv:2111.02403},
  year={2021}
}
Owner
Healthcare Intelligence Laboratory
Healthcare Intelligence Laboratory
Finetuning Pipeline

KLUE Baseline Korean(한국어) KLUE-baseline contains the baseline code for the Korean Language Understanding Evaluation (KLUE) benchmark. See our paper fo

74 Dec 13, 2022
My personal code and solution to the Synacor Challenge from 2012 OSCON.

Synacor OSCON Challenge Solution (2012) This repository contains my code and solution to solve the Synacor OSCON 2012 Challenge. If you are interested

2 Mar 20, 2022
Analysing poker data from home games with friends

Poker Game Analysis Analysing poker data from home games with friends. Not a lot of data is collected, so this project is primarily focussed on descri

Stavros Karmaniolos 1 Oct 15, 2022
A library for optimization on Riemannian manifolds

TensorFlow RiemOpt A library for manifold-constrained optimization in TensorFlow. Installation To install the latest development version from GitHub:

Oleg Smirnov 83 Dec 27, 2022
Code repo for "Cross-Scale Internal Graph Neural Network for Image Super-Resolution" (NeurIPS'20)

IGNN Code repo for "Cross-Scale Internal Graph Neural Network for Image Super-Resolution" [paper] [supp] Prepare datasets 1 Download training dataset

Shangchen Zhou 278 Jan 03, 2023
This repository is for EMNLP 2021 paper: It is Not as Good as You Think! Evaluating Simultaneous Machine Translation on Interpretation Data

InterpretationData This repository is for our EMNLP 2021 paper: It is Not as Good as You Think! Evaluating Simultaneous Machine Translation on Interpr

4 Apr 21, 2022
PASTRIE: A Corpus of Prepositions Annotated with Supersense Tags in Reddit International English

PASTRIE Official release of the corpus described in the paper: Michael Kranzlein, Emma Manning, Siyao Peng, Shira Wein, Aryaman Arora, and Nathan Schn

NERT @ Georgetown 4 Dec 02, 2021
Vision-and-Language Navigation in Continuous Environments using Habitat

Vision-and-Language Navigation in Continuous Environments (VLN-CE) Project Website — VLN-CE Challenge — RxR-Habitat Challenge Official implementations

Jacob Krantz 132 Jan 02, 2023
Контрольная работа по математическим методам машинного обучения

ML-MathMethods-Test Контрольная работа по математическим методам машинного обучения. Вычисление основных статистик, диаграмм и графиков, проверка разл

Stas Ivanovskii 1 Jan 06, 2022
Dynamical movement primitives (DMPs), probabilistic movement primitives (ProMPs), spatially coupled bimanual DMPs.

Movement Primitives Movement primitives are a common group of policy representations in robotics. There are many different types and variations. This

DFKI Robotics Innovation Center 63 Jan 06, 2023
Perspective: Julia for Biologists

Perspective: Julia for Biologists 1. Examples Speed: Example 1 - Single cell data and network inference Domain: Single cell data Methodology: Network

Elisabeth Roesch 55 Dec 02, 2022
Differential rendering based motion capture blender project.

TraceArmature Summary TraceArmature is currently a set of python scripts that allow for high fidelity motion capture through the use of AI pose estima

William Rodriguez 4 May 27, 2022
v objective diffusion inference code for PyTorch.

v-diffusion-pytorch v objective diffusion inference code for PyTorch, by Katherine Crowson (@RiversHaveWings) and Chainbreakers AI (@jd_pressman). The

Katherine Crowson 635 Dec 30, 2022
A python implementation of Physics-informed Spline Learning for nonlinear dynamics discovery

PiSL A python implementation of Physics-informed Spline Learning for nonlinear dynamics discovery. Sun, F., Liu, Y. and Sun, H., 2021. Physics-informe

Fangzheng (Andy) Sun 8 Jul 13, 2022
Training data extraction on GPT-2

Training data extraction from GPT-2 This repository contains code for extracting training data from GPT-2, following the approach outlined in the foll

Florian Tramer 62 Dec 07, 2022
High-resolution networks and Segmentation Transformer for Semantic Segmentation

High-resolution networks and Segmentation Transformer for Semantic Segmentation Branches This is the implementation for HRNet + OCR. The PyTroch 1.1 v

HRNet 2.8k Jan 07, 2023
Code for the paper "Adversarial Generator-Encoder Networks"

This repository contains code for the paper "Adversarial Generator-Encoder Networks" (AAAI'18) by Dmitry Ulyanov, Andrea Vedaldi, Victor Lempitsky. Pr

Dmitry Ulyanov 279 Jun 26, 2022
BBB streaming without Xorg and Pulseaudio and Chromium and other nonsense (heavily WIP)

BBB Streamer NG? Makes a conference like this... ...streamable like this! I also recorded a small video showing the basic features: https://www.youtub

Lukas Schauer 60 Oct 21, 2022
CALVIN - A benchmark for Language-Conditioned Policy Learning for Long-Horizon Robot Manipulation Tasks

CALVIN CALVIN - A benchmark for Language-Conditioned Policy Learning for Long-Horizon Robot Manipulation Tasks Oier Mees, Lukas Hermann, Erick Rosete,

Oier Mees 107 Dec 26, 2022
Refactoring dalle-pytorch and taming-transformers for TPU VM

Text-to-Image Translation (DALL-E) for TPU in Pytorch Refactoring Taming Transformers and DALLE-pytorch for TPU VM with Pytorch Lightning Requirements

Kim, Taehoon 61 Nov 07, 2022